PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00258g00519.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family C3H
Protein Properties Length: 294aa    MW: 30920.1 Da    PI: 9.684
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00258g00519.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.51.7e-063659225
                              -S---SGGGGTS--TTTTT-SS-S CS
                   zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                              k ++C  f+ t  C++G++C+F H
  Peaxi162Scf00258g00519.1 36 KSKPCTKFFSTAGCPFGESCHFLH 59
                              7789******************** PP

2zf-CCCH25.52.3e-0897122227
                               -S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                               kt+lC+ f     Ck+Gd+C+FaHg+
  Peaxi162Scf00258g00519.1  97 KTKLCNKFNSAEGCKFGDKCHFAHGE 122
                               89**********************96 PP

3zf-CCCH31.33.5e-10261285126
                               --S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                               ykt+ C +f + G C +G+rC+FaHg
  Peaxi162Scf00258g00519.1 261 YKTKMCENFTK-GSCTFGERCHFAHG 285
                               9**********.*************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.913461IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.7093462IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-63560IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.9E-83659IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-43659IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.4E-1493125IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-894125IPR000571Zinc finger, CCCH-type
SMARTSM003568.5E-495122IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.7795123IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-697122IPR000571Zinc finger, CCCH-type
SuperFamilySSF547913.94E-15161236IPR004088K Homology domain, type 1
SMARTSM003221.2E-12165235IPR004087K Homology domain
PROSITE profilePS5008414.634166230IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.102.6E-16167235IPR004088K Homology domain, type 1
CDDcd001053.36E-14168230No hitNo description
PfamPF000137.8E-12168232IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.101.3E-16258291IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-9258290IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.38260287IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-6260286IPR000571Zinc finger, CCCH-type
PfamPF006428.4E-7261285IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MDIRKRNRNE GGFNSNGAFK KYKSEMDSLS SGIGSKSKPC TKFFSTAGCP FGESCHFLHY  60
VPGGYNAVAQ MMNMAPSQAS RNAAAPPMAN GNTPAVKTKL CNKFNSAEGC KFGDKCHFAH  120
GEWEIGKPII PSQEDPRGMG VGPIPGRFGG RMEPPVSGPA ASFGTSATAK ISVDASLAGA  180
IIGKGGVNSK QICRQTGAKL AIRDHETDKN LRNIELEGTF EQISQASAMV RELISSLGSA  240
GGMGRTPAAQ GGGPAPPMSN YKTKMCENFT KGSCTFGERC HFAHGAAELR KTGV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009614706.10.0PREDICTED: zinc finger CCCH domain-containing protein 14-like
RefseqXP_016477421.10.0PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-113C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLK4D2B71e-180K4D2B7_SOLLC; Uncharacterized protein
STRINGSolyc10g078750.1.11e-180(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8452498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.18e-65C3H family protein